I found answer thanks to #org-mode group on freenode

I have problem with org-agenda-list and org-todo-list functions, they break my windows splits and split emacs to 2 equal windows, is there any way to fix it? Or any other function for load todo/agenda in current active window? I have workaround with winner-undo (but it pissing me off).

Emacs window layout before function calls Before function call

Emacs after functions call enter image description here

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