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I'm switching from Sweave to knitr and like it very much. Big THANKS to Yihui! One thing that keeps annoying me is that plot windows pop up and get active. So when I write while knitr is working, my editor looses focus every so often. This happens even if there's no plot produced in the code chunk. Is there a way to avoid this? Here's my sessionInfo () , in case that helps: R version 2.15.0 (2012-03-30) Platform: x86_64-unknown-linux-gnu (64-bit) locale: [1] LC_CTYPE=de_DE.UTF-8 LC_NUMERIC=C [3] LC_TIME=de_DE.UTF-8 LC_COLLATE=de_DE.UTF-8 [5] LC_MONETARY=de_DE.UTF-8 LC_MESSAGES=de_DE.UTF-8 [7] LC_PAPER=C LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=de_DE.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] grid stats graphics grDevices utils datasets methods [8] base other attached packages: [1] hyperSpec.sim_0.5 mvtnorm_0.9-9992 hyperSpec_0.98-20120531 [4] lattice_0.20-6 knitr_0.5 loaded via a namespace (and not attached): [1] arrayhelpers_0.75-20120531 codetools_0.2-8 [3] digest_0.5.2 evaluate_0.4.2 [5] formatR_0.4 highlight_0.3.1 [7] parser_0.0-14 plyr_1.7.1 [9] Rcpp_0.9.10 stringr_0.6 [11] tools_2.15.0

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