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The fastest and efficient way to handle bulk delete on Datastore is by using the new mapper API announced on the latest Google I/O.
If your language of choice is Python, you just have to register your mapper in a mapreduce.yaml file and define a function like this:
from mapreduce import operation as op
def process(entity):
yield op.db.Delete(entity)
On Java you should have a look to this article that suggests a function like this:
@Override
public void map(Key key, Entity value, Context context) {
log.info("Adding key to deletion pool: " + key);
DatastoreMutationPool mutationPool = this.getAppEngineContext(context)
.getMutationPool();
mutationPool.delete(value.getKey());
}