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What's the best way to setup the eclipse project compiler configuration for Java 6 annotation processors? My solution is to setup the org.eclipse.jdt.apt.core.prefs and factorypath files manually. This is a bit cumbersome: Reference the processor jar in the factorypath file Configure the eclipse annotation processor output directory (org.eclipse.jdt.apt.genSrcDir property in org.eclipse.jdt.apt.core.prefs ) Add the eclipse annotation processor output directory as source folder One problem is that eclipse generated sources will be compiled with maven. Only maven clean compile is reliable as it removes the eclipse generated source files. (Eclipse and javac generated source files could be out of sync.) Is there are better solution to configure maven without eclipse generated source files at the maven source path? <project> <properties> <eclipse.generated.src>${project.build.directory}/eclipse</eclipse.generated.src> </properties> <build> <plugin> <groupId>org.codehaus.mojo</groupId> <artifactId>build-helper-maven-plugin</artifactId> <version>1.4</version> <executions> <execution> <id>add-source</id> <phase>generate-sources</phase> <goals> <goal>add-source</goal> </goals> <configuration> <sources> <source>${eclipse.generated.src}</source> </sources> </configuration> </execution> </executions> </plugin> <plugin>

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