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I have a 3D array of data (2 spatial dimensions and 1 time dimension) and I'm trying to produce an animated contour plot using matplotlib.animate. I'm using this link as a basis:
http://jakevdp.github.io/blog/2012/08/18/matplotlib-animation-tutorial/
And here's my attempt:
import numpy as np
from matplotlib import pyplot as plt
from matplotlib import animation
from numpy import array, zeros, linspace, meshgrid
from boutdata import collect
# First collect data from files
n = collect("n") # This is a routine to collect data
Nx = n.shape[1]
Nz = n.shape[2]
Ny = n.shape[3]
Nt = n.shape[0]
fig = plt.figure()
ax = plt.axes(xlim=(0, 200), ylim=(0, 100))
cont, = ax.contourf([], [], [], 500)
# initialisation function
def init():
cont.set_data([],[],[])
return cont,
# animation function
def animate(i):
x = linspace(0, 200, Nx)
y = linspace(0, 100, Ny)
x,y = meshgrid(x,y)
z = n[i,:,0,:].T
cont.set_data(x,y,z)
return cont,
anim = animation.FuncAnimation(fig, animate, init_func=init,
frames=200, interval=20, blit=True)
plt.show()
But when I do this, I get the following error:
Traceback (most recent call last):
File "showdata.py", line 16, in <module>
cont, = ax.contourf([], [], [], 500)
File "/usr/lib/pymodules/python2.7/matplotlib/axes.py", line 7387, in contourf
return mcontour.QuadContourSet(self, *args, **kwargs)
File "/usr/lib/pymodules/python2.7/matplotlib/contour.py", line 1112, in __init__
ContourSet.__init__(self, ax, *args, **kwargs)
File "/usr/lib/pymodules/python2.7/matplotlib/contour.py", line 703, in __init__
self._process_args(*args, **kwargs)
File "/usr/lib/pymodules/python2.7/matplotlib/contour.py", line 1125, in _process_args
x, y, z = self._contour_args(args, kwargs)
File "/usr/