Android CheckBox -- Restoring State After Screen Rotation

Rpond, I have not overriden onResume, so I don't think that is the issue. Here is the Activity and associated layouts for everyone to see. In the code you'll see many Log.d statements (there were even more at one point.) With these Log statements I was able to verify that the code works exactly as I expect it to. Also, notice the onCheckChangedListener I add to each CheckBox. All it does is print a Log statement telling me the state of one of my CheckBoxes changed. It was through this that I was able to determine the state of the CheckBoxes were being altered after my onCreate returns. You'll see how I call examineCheckboxes() at the end of my onCreate. The Log statements produced from this are not what is shown on my screen after a rotation, and I can see the state of my boxes being altered afterwards (because of the onCheckChangedListener.)

SelectItems.java:

public class SelectItems extends Activity {

public static final int SUCCESS = 95485839;

public static final String ITEM_LIST = "item list";
public static final String ITEM_NAME = "item name";

// Save state constants
private final String SAVE_SELECTED = "save selected";

private DbHelper db;

private ArrayList<Long> selectedIDs;

ArrayList<CheckBox> cboxes = new ArrayList<CheckBox>();

@Override
public void onCreate(Bundle savedInstanceState) {

    super.onCreate(savedInstanceState);
    setContentView(R.layout.select_items);

    // Create database helper
    db = new DbHelper(this);
    db.open();

    initViews(savedInstanceState);

    examineCheckboxes();

}

private void initViews(Bundle savedState) {
    initButtons();

    initHeading();

    initList(savedState);
}

private void initButtons() {

    // Setup event for done button
    Button doneButton = (Button) findViewById(R.id.done_button);
    doneButton.setOnClickListener(new OnClickListener() {
        public void onClick(View v) {
            done();
        }
    });

    // Setup