42
I am looking to be able to generate a random uniform sample of particle locations that fall within a spherical volume.
The image below (courtesy of http://nojhan.free.fr/metah/) shows what I am looking for. This is a slice through the sphere, showing a uniform distribution of points:

This is what I am currently getting:

You can see that there is a cluster of points at the center due to the conversion between spherical and Cartesian coordinates.
The code I am using is:
def new_positions_spherical_coordinates(self):
radius = numpy.random.uniform(0.0,1.0, (self.number_of_particles,1))
theta = numpy.random.uniform(0.,1.,(self.number_of_particles,1))*pi
phi = numpy.arccos(1-2*numpy.random.uniform(0.0,1.,(self.number_of_particles,1)))
x = radius * numpy.sin( theta ) * numpy.cos( phi )
y = radius * numpy.sin( theta ) * numpy.sin( phi )
z = radius * numpy.cos( theta )
return (x,y,z)
Below is some MATLAB code that supposedly creates a uniform spherical sample, which is similar to the equation given by http://nojhan.free.fr/metah. I just can't seem to decipher it or understand what they did.
function X = randsphere(m,n,r)
% This function returns an m by n array, X, in which
% each of the m rows has the n Cartesian coordinates
% of a random point uniformly-distributed over the
% interior of an n-dimensional hypersphere with
% radius r and center at the origin. The function
% 'randn' is initially used to generate m sets of n
% random variables with independent multivariate
% normal distribution, with mean 0 and variance 1.
% Then the incomplete gamma function