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I apologise for a seemingly duplicate question, but none of the dozens I've looked at actually had the same problem. I have the following directory structure: /.htaccess /index.php /subfolder/.htaccess /subfolder/index.php I'd like all requests for pages to be handled by /index.php , unless the request starts /subfolder in which case it should be handled by /subfolder/index.php e.g. /abc to be rewritten to /index.php?u=abc e.g. /subfolder/def to be rewritten to /subfolder/index.php?u=def I've been going round in circles over this, so any help will be massively appreciated. EDIT: forgot to mention the problem! Requests within the subfolder are handled by the root index.php , not the subfolder one. (Except requests for /subfolder ) Current File contents /.htaccess Options -Indexes -MultiViews +FollowSymLinks RewriteEngine On RewriteBase / RewriteCond %{REQUEST_FILENAME} !-f RewriteCond %{REQUEST_URI} !^/admin RewriteRule ^(.*)$ /index.php?u=$1 [NC,QSA] /subfolder/.htaccess RewriteBase /admin/ RewriteCond %{REQUEST_FILENAME} !-f RewriteRule ^(.*)$ /admin/index.php?u=$1 [NC,QSA]

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