Android: Duplicating of fragments when using Support Fragment Manager

I have a very weird issue with fragments. I use the newest support library. I also use similar code as is used by Google in their IOSCHED project

But I have problem with recreating of activity after rotation. After an activity is destroyed and created again, I call methods for managing the fragment transaction (in onStart method). This line is called only once, but it creates the fragment TWICE !

This is my activity method:

public abstract class SinglePaneActivity extends FragmentActivity
{
    @Override
    protected void onStart()
    {
        super.onStart();

        if(mFragment == null)
        {
            mFragment = onCreatePane();     
            mFragment.setArguments(Utils.intentToFragmentArguments(getIntent()));

            Log.w(TAG, "Fragment creation counter = " + createCounter);
            createCounter++;

            getSupportFragmentManager() 
            .beginTransaction()
            .add(R.id.root_container,mFragment)
            .commit();
        }
    }

    @Override
    protected void onStop()
    {
        Log.i(TAG, "onStop");
        if(mFragment != null)
        {
            getSupportFragmentManager()
            .beginTransaction()
            .remove(mFragment)
            .commit();

            mFragment = null;
        }
        super.onStop();
    }
}

and my logs:

--Start of application--
11-18 13:26:37.050: I/SinglePaneActivity(19040): onCreate
11-18 13:26:37.050: I/SinglePaneActivity(19040): onStart
11-18 13:26:37.055: W/SinglePaneActivity(19040): replacing fragment, counter = 1
11-18 13:26:37.075: I/MyFragment(19040): onCreate
11-18 13:26:37.110: I/MyFragment(19040): onActivityCreated
--Rotating the device--
11-18 13:26:39.600: I/SinglePaneActivity(19040): onStop
11-18 13:26:39.600: I/SinglePaneActivity(19040): onDe