How to abort a thread in a fast and clean way in java?

The way I have implemented something like this in the past is to implement a shutdown() method in my Runnable subclass which sets an instance variable called should_shutdown to true. The run() method normally does something in a loop, and will periodically check should_shutdown and when it is true, returns, or calls do_shutdown() and then returns.

You should keep a reference to the current worker thread handy, and when the user changes a value, call shutdown() on the current thread, and wait for it to shutdown. Then you can launch a new thread.

I would not recommend using Thread.stop as it was deprecated last time I checked.

Edit:

Read your comment about how your worker thread just calls another method which takes a while to run, so the above does not apply. In this case, your only real options are to try calling interrupt() and see if has any effect. If not, consider somehow manually causing the function your worker thread is calling to break. For example, it sounds like it is doing some complex rendering, so maybe destroy the canvas and cause it to throw an exception. This is not a nice solution, but as far as I can tell, this is the only way to stop a thread in suituations like this.